For better experience, turn on JavaScript!


TSEE

TSEE

TSEE is a tool for visualization of gene expression patterns in single-cell RNA-seq (scRNA-seq) time-series data.

Topic

RNA-seq; Transcriptomics; Gene expression

Details

  • Operation: RNA-Seq analysis; Visualisation
  • Software interface: Command-line user interface
  • Language: MATLAB
  • Operating system: Linux; Mac OS X
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Credit: NSFC, the Strategic Priority Research Program of Chinese Academy of Sciences (CAS), Mathematical Biosciences Institute (MBI) at Ohio State University, NSF.
  • Contact: skan_seu _at_ 163.com | skan_seu _at_ 163.com | mal _at_ big.ac.cn | lwan _at_ amss.ac.cn
  • Collection: -

Publications

An S, Ma L, Wan L "TSEE: an elastic embedding method to visualize the dynamic gene expression patterns of time series single-cell RNA sequencing data." BMC Genomics. 2019 Apr 4;20(Suppl 2):224. https://doi.org/10.1186/s12864-019-5477-8
PMID: 30967106
PMCID: PMC6456934


Download and documentation








If you find errors, please report here.