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Transcriptator

Transcriptator

Transcriptor is a pipeline tool for GO enrichment analysis in RNA-seq datasets that lack the reference genome.

Topic

Data submission, annotation and curation; RNA-Seq; RNA; Transcription factors and regulatory sites; Data visualisation

Details

  • Operation: Sequence annotation; Gene-set enrichment analysis; Gene expression analysis
  • Software interface: Command-line user interface
  • Language: R, Python
  • Operating system: Linux
  • License: Not stated
  • Cost: -
  • Version name: -
  • Credit: INTEROMICS flagship project, National Research University Higher School of Economics RSF.
  • Contact: kumpar _at_ na.icar.cnr.it Kumar Parijat Tripathi
  • Collection: -

Publications

Tripathi KP, Evangelista D, Zuccaro A, Guarracino MR "Transcriptator: An Automated Computational Pipeline to Annotate Assembled Reads and Identify Non Coding RNA." PLoS ONE 2015; 10(11):e0140268 https://doi.org/10.1371/journal.pone.0140268
PMID: 26581084
PMCID: PMC4651556


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