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Trimmomatic

Trimmomatic

Trimmomatic is a tool for trimming Illumina sequenced data reads.

Topic

Sequencing; Sequence analysis; Data quality management

Details

  • Operation: Sequence trimming; Formatting; Sequencing quality control
  • Input: FASTQ
  • Output: -
  • Software interface: Command-line user interface
  • Language: Java
  • Operating system: Linux; Microsoft Windows; Mac OS X
  • License: GNU General Public License v3
  • Cost: Free
  • Version name: 0.39
  • Maturity: Mature
  • Credit: Bundesministerium für Bildung und Forschung (BMBF), BLE/BMELV Verbundprojekt.
  • Contact: Bjoern Usadel usadel _at_ bio1.rwth-aachen.de | Anthony M. Bolger bolger _at_ bio1.rwth-aachen.de
  • Collection: -

Publications

Bolger AM, Lohse M, Usadel B "Trimmomatic: a flexible trimmer for Illumina sequence data." Bioinformatics. 2014 Aug 1;30(15):2114-20. Epub 2014 Apr 1. https://doi.org/10.1093/bioinformatics/btu170
PMID: 24695404
PMCID: PMC4103590


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