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VASC

VASC

VASC (deep variational autoencoder) is a tool for dimension reduction in single-cell RNA-seq (scRNA-seq) data. The VASC algorithm uses Deep Variational Autoencoder.

Topic

RNA-seq; Gene expression

Details

  • Operation: RNA-Seq analysis
  • Software interface: Command-line user interface
  • Language: Python
  • Operating system: Linux; Mac OS X
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Credit: National Natural Science Foundation of China, Tsinghua University Initiative Scientific Research Program.
  • Contact: jgu _at_ tsinghua.edu.cn | jgu _at_ tsinghua.edu.cn
  • Collection: -

Publications

Wang D, Gu J "VASC: Dimension Reduction and Visualization of Single-cell RNA-seq Data by Deep Variational Autoencoder." Genomics Proteomics Bioinformatics. 2018 Oct;16(5):320-331. https://doi.org/10.1016/j.gpb.2018.08.003
PMID: 30576740
PMCID: PMC6364131


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