VDJSeq-Solver is a tool to identify clonal lymphocyte populations from paired-end RNA-seq data from mRNA neoplastic cells. It identifies the main clone characterizing the tissue based on the most abundant V(D)J rearrangement. Note that the source (.tar.gz) is 3.9 GB.
RNA-seq; RNA; RNA-seq
Paciello G, Acquaviva A, Pighi C, Ferrarini A, Macii E, Zamo' A, Ficarra E "VDJSeq-Solver: in silico V(D)J recombination detection tool." PLoS One. 2015 Mar 23;10(3):e0118192. eCollection 2015. https://doi.org/10.1371/journal.pone.0118192
PMID: 25799103
PMCID: PMC4370828
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