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VDJSeq-Solver

VDJSeq-Solver

VDJSeq-Solver is a tool to identify clonal lymphocyte populations from paired-end RNA-seq data from mRNA neoplastic cells. It identifies the main clone characterizing the tissue based on the most abundant V(D)J rearrangement. Note that the source (.tar.gz) is 3.9 GB.

Topic

RNA-seq; RNA; RNA-seq

Details

Publications

Paciello G, Acquaviva A, Pighi C, Ferrarini A, Macii E, Zamo' A, Ficarra E "VDJSeq-Solver: in silico V(D)J recombination detection tool." PLoS One. 2015 Mar 23;10(3):e0118192. eCollection 2015. https://doi.org/10.1371/journal.pone.0118192
PMID: 25799103
PMCID: PMC4370828


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