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Wishbone
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Wishbone

Wishbone is a tool to position cells with accompanying bifurcating developmental trajectories in single-cell RNA-seq or cytometry data.



Wishbone

Wishbone is a tool to position cells with accompanying bifurcating developmental trajectories in single-cell RNA-seq or cytometry data.

Topic

RNA-seq

Details

  • Operation: RNA-Seq analysis
  • Software interface: Command-line user interface
  • Language: Python
  • Operating system: Microsoft Windows, Mac OS X, Linux
  • License: GNU GPL v2
    • Cost: Free
  • Version name: -
    • Maturity: Stable
  • Credit: National Science Foundation (NSF), the National Institutes of Health (NIH), Packard Fellowship for Science and Engineering, David and Fela Shapell Family Foundation INCPM Fund, Nissim Center, for the Development of Scientific Resources, ISF.
  • Contact: Dana Pe’er dpeer _at_ biology.columbia.edu
  • Collection: -

Publications

Setty M, Tadmor MD, Reich-Zeliger S, Angel O, Salame TM, Kathail P, Choi K, Bendall S, Friedman N, Pe'er D "Wishbone identifies bifurcating developmental trajectories from single-cell data." Nat Biotechnol. 2016 Jun;34(6):637-45. https://doi.org/10.1038/nbt.3569
PMID: 27136076
PMCID: PMC4900897


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