anchor

Anchor is a tool for finding unimodal, bimodal, and multimodal features in any data normalized between 0 and 1, such as alternative splicing.

Topic

Sequencing; RNA-seq; Transcriptomics

Details

Operation: Differential gene expression analysis; Splicing model analysis
Software interface: Command-line user interface
Language: Python
Operating system: Linux; Microsoft Windows; Mac OS X
License: BSD 3-Clause "New" or "Revised" License

Cost

Version name: -

Maturity:

Credit: The National Institutes of Health (NIH), the California Institute of Regenerative Medicine, the Brain Research Foundation, Alfred P. Sloan, National Defense Science, NumFOCUS John Hunter Technology.
Contact: Gene W. Yeo geneyeo _at_ ucsd.edu
Collection: Expedition

Publications

Song Y, Botvinnik OB, Lovci MT, Kakaradov B, Liu P, Xu JL, Yeo GW "Single-Cell Alternative Splicing Analysis with Expedition Reveals Splicing Dynamics during Neuron Differentiation." Mol Cell. 2017 Jul 6;67(1):148-161.e5. 2017 Jun 29. https://doi.org/10.1016/j.molcel.2017.06.003
PMID: 28673540
PMCID: PMC5540791

Download and documentation

Source: https://github.com/YeoLab/anchor
Documentation: https://yeolab.github.io/anchor
Home page: https://github.com/YeoLab/anchor

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