anota2seq is a tool for the analysis of translational efficiency and differential expression analysis for polysome-profiling and ribosome-profiling studies that are quantified by RNA-seq or DNA-microarray.
Gene expression; Gene regulation; GWAS study; Microarray experiment; RNA-seq; Sequencing
Oertlin C, Lorent J, Murie C, Furic L, Topisirovic I, Larsson O "Generally Applicable Transcriptome-Wide Analysis of Translation Using anota2seq" Nucleic Acids Res. 2019;47(12):e70. https://doi.org/10.1093/nar/gkz223
PMID: 30926999
PMCID: PMC6614820
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J1, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M "Orchestrating high-throughput genomic analysis with Bioconductor." Nat Methods. 2015 Feb;12(2):115-21. https://doi.org/10.1038/nmeth.3252
PMID: 25633503
PMCID: PMC4509590
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JY, Zhang J. "Bioconductor: open software development for computational biology and bioinformatics." Genome Biol. 2004;5(10):R80. Epub 2004 Sep 15. https://doi.org/10.1186/gb-2004-5-10-r80
PMID: 15461798
PMCID: PMC545600
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