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asSeq
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asSeq

asSeq is a too to expression quantitative trait locus (eQTL) mapping. The asSeq algorithm combines the total read count and allele-specific expression to identify cis- and trans-eQTL.



asSeq

asSeq is a too to expression quantitative trait locus (eQTL) mapping. The asSeq algorithm combines the total read count and allele-specific expression to identify cis- and trans-eQTL.

Topic

Sequencing; Mapping; RNA; ChIP-seq; RNA-Seq; Genetics

Details

  • Operation: Mapping
  • Software interface: Command-line user interface; Library
  • Language: R
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: GNU General Public License v>=2
    • Cost: Free
  • Version name: 0.99.301
  • Credit: The National Institutes of Health (NIH), the Gillings Innovative Laboratory in Statistical Genomics at UNC Chapel Hill.
  • Contact: Wei Sun wesun _at_ email.unc.edu
  • Collection: -

Publications

Sun W "A statistical framework for eQTL mapping using RNA-seq data." Biometrics 2012; 68(1):1-11 https://doi.org/10.1111/j.1541-0420.2011.01654.x
PMID: 21838806
PMCID: PMC3218220


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