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cb_sniffer

cb_sniffer

cb_sniffer is a tool to identify for mutant and reference barcodes in single-cell RNA-seq data.

Topic

Gene expression; RNA-seq

Details

  • Operation: RNA-Seq quantification; RNA-Seq analysis
  • Software interface: Command-line user interface
  • Language: Python
  • Operating system: Microsoft Windows, Mac OS X, Linux
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Maturity: Stable
  • Credit: NCI K12 program.
  • Contact: Timothy J. Ley timley _at_ wustl.edu
  • Collection: -

Publications

Petti AA, Williams SR, Miller CA, Fiddes IT, Srivatsan SN, Chen DY, Fronick CC, Fulton RS, Church DM, Ley TJ "A general approach for detecting expressed mutations in AML cells using single cell RNA-sequencing." Nat Commun. 2019 Aug 14;10(1):3660. https://doi.org/10.1038/s41467-019-11591-1
PMID: 31413257
PMCID: PMC6694122


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