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ccRemover

ccRemover

ccRemover is an R tool to remove the cell-cycle effects from single-cell RNA-seq data. The ccRemover algorithm uses a method that preserves significant features after removing the cell-cycle effect.

Topic

Gene expression; RNA-seq

Details

  • Operation: RNA-Seq analysis
  • Software interface: Command-line user interface; Library
  • Language: R
  • Operating system: Microsoft Windows, Mac OS X, Linux
  • License: GNU General Public License v3
  • Cost: Free
  • Version name: 1.0.4
  • Maturity: Stable
  • Credit: Indiana Clinical and Translational Sciences Institute, he National Institutes of Health, National Center for Advancing Translational Sciences, Clinical and Translational Sciences Award.
  • Contact: Jun Li jun.li _at_ nd.edu
  • Collection: -

Publications

Barron M, Li J "Identifying and removing the cell-cycle effect from single-cell RNA-Sequencing data." Sci Rep. 2016 Sep 27;6:33892. https://doi.org/10.1038/srep33892
PMID: 27670849
PMCID: PMC5037372


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