cellassign is an R tool for the assignment of known and de novo cell types of scRNA-seq based on marker genes.
Gene expression; RNA-seq
Zhang AW, O'Flanagan C, Chavez EA, Lim JLP, Ceglia N, McPherson A, Wiens M, Walters P, Chan T, Hewitson B, Lai D, Mottok A, Sarkozy C, Chong L, Aoki T, Wang X, Weng AP, McAlpine JN, Aparicio S, Steidl C, Campbell KR, Shah SP "Probabilistic cell-type assignment of single-cell RNA-seq for tumor microenvironment profiling." Nat Methods. 2019 Oct;16(10):1007-1015. Sep 9. https://doi.org/10.1038/s41592-019-0529-1
PMID: 31501550
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