cufflinks-IP is on Institute Pasteur - Cufflinks consist of a suite of tools for differential gene expression analysis of RNA-seq data. It assembles aligned reads in a set of transcripts and estimates the relative abundances. The Cufflinks suite consists of the following tools: cufflinks, cuffcompare, cuffmerge, cuffquant, cuffdiff, and cuffnorm.
RNA-Seq; Sequencing
Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, Salzberg SL, Wold BJ, Pachter L "Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation." Nat Biotechnol. 2010 May;28(5):511-5. https://doi.org/10.1038/nbt.1621
PMID: 20436464
PMCID: PMC3146043
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