cutPrimers

cutPrimers is a tool for removing primers from high-throughput sequencing reads.

Topic

Sequencing; Quality affairs; Sequence analysis

Details

Operation: Sequence trimming
Input: FASTQ, FASTQ.gzip
Output: FASTQ
Software interface: Command-line user interface
Language: Python
Operating system: Microsoft Windows, Mac OS X, Linux
License: GNU General Public License v3

Cost

Version name: -

Maturity:

Credit: Skolkovo foundation
Contact: Maxim L. Filipenko max _at_ niboch.nsc.ru
Collection: -

Publications

Kechin A, Boyarskikh U, Kel A, Filipenko M "cutPrimers: A New Tool for Accurate Cutting of Primers from Reads of Targeted Next Generation Sequencing." J Comput Biol. 2017 Nov;24(11):1138-1143. Jul 17. https://doi.org/10.1089/cmb.2017.0096
PMID: 28715235

Download and documentation

Source: https://github.com/aakechin/cutPrimers
Documentation: https://github.com/aakechin/cutPrimers/b
lob/master/README.md
Home page: https://github.com/aakechin/cutPrimers

If you find errors, please report here.

SECTIONS

Tutorials
In-house software
Blog
News
Find Jobs
History
Definition of Bioinformatics
ENCYCLOPEDIA
COVID-19
⚬ Timeline of outbreak
⚬ Blog
⚬ Scientific Facts
⚬ Daily statistics
⚬ News

TOOLS

Find thousands of Bioinformatics and Life Science software tools and databases in the newly launched

Database of Bioinformatics Software Tools and Resources.

Ads

cutPrimers

cutPrimers

Topic

Details

Publications

Download and documentation

TOOLS

1. SNP Tools

2. GWAS Tools

3. Genotype Imputation Tools

4. MSA tools

5. CNV tools

6. WGA tools

7. RNA-seq tools

8. Proteomics Tools

9. Nucleic Acid Structure Analysis Tools

10. Nucleic Acid Sequence Analysis Tools

11. Sequence Logo Tools

12. In-house Software Tools