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cutadapt-IP

cutadapt-IP

Cutadapt-IP is web-based a tool at Galaxy Pasteur to remove adapters, primers, and poly-A tails from high-throughput sequencing reads.

Topic

Sequencing; Quality affairs; Sequence analysis

Details

  • Operation: Sequence trimming
  • Input: FASTQ
  • Output: FASTQ
  • Software interface: Web user interface
  • Language: -
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Maturity: Mature
  • Credit: National Human Genome Research Institute, National Institutes of Health, U.S. National Science Foundation, Huck Institutes for the Life Sciences at Penn State, Pennsylvania Department of Health
  • Contact: galaxy _at_ pasteur.fr
  • Collection: Galaxy_platform_Pasteur

Publications

Marcel Martin "Cutadapt removes adapter sequences from high-throughput sequencing reads" EMBnet.journal, [S.l.], v. 17, n. 1, p. pp. 10-12, may 2011. ISSN 2226-6089. https://doi.org/10.14806/ej.17.1.200


Afgan E, Baker D, van den Beek M, Blankenberg D, Bouvier D, Čech M, Chilton J, Clements D, Coraor N, Eberhard C, Grüning B, Guerler A, Hillman-Jackson J, Von Kuster G, Rasche E, Soranzo N, Turaga N, Taylor J, Nekrutenko A, Goecks J "The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update." Nucleic Acids Res. 2016 Jul 8;44(W1):W3-W10. https://doi.org/10.1093/nar/gkw343
PMID: 27137889
PMCID: PMC4987906


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