eXpress is a tool to quantify RNA-seq data, but it is also applicaple to ChIP-seq, metagenomics, and large-scale sequencing data in general. The eXpress streaming algorithm computes sequenced DNA or RNA in real-time. Unfortunately, the Authors no longer maintain the software and recommend to use the kallisto tool.
Transcriptomics; Gene expression; RNA-seq
Roberts A, Pachter L "Streaming fragment assignment for real-time analysis of sequencing experiments." Nat Methods. 2013 Jan;10(1):71-3. https://doi.org/10.1038/nmeth.2251
PMID: 23160280
PMCID: PMC3880119
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