For better experience, turn on JavaScript!


f-scLVM

f-scLVM

f-scLVM (factorial single-cell latent variable model) implemented in the slalom package to estimate factors, refine gene set annotations to assess and model confounding factors contributing to cell-cell variability.

Topic

Gene expression; RNA-seq; Annotation

Details

  • Operation: Differential gene expression analysis
  • Software interface: Command-line user interface
  • Language: R;Python
  • Operating system: Microsoft Windows, Mac OS X, Linux
  • License: Apache License 2.0
  • Cost: Free
  • Version name: -
  • Credit: UK Medical Research Council, the National Health and Medical Research Council of Australia .
  • Contact: Florian Buettner fbuettner.phys _at_ gmaill.com
  • Collection: -

Publications

Buettner F, Pratanwanich N, McCarthy DJ, Marioni JC, Stegle O "f-scLVM: scalable and versatile factor analysis for single-cell RNA-seq." Genome Biol. 2017 Nov 7;18(1):212. https://doi.org/10.1186/s13059-017-1334-8
PMID: 29115968
PMCID: PMC5674756


Download and documentation








If you find errors, please report here.