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fishpond
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fishpond

fishpond is a tool for the expression analysis of RNA-seq data. The fishpond algorithm uses a nonparametric method.



fishpond

fishpond is a tool for the expression analysis of RNA-seq data. The fishpond algorithm uses a nonparametric method.

Topic

RNA-seq

Details

  • Operation: RNA-Seq analysis
  • Software interface: Command-line user interface
  • Language: R
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: GNU GPL v2
    • Cost: Free
  • Version name: 1.3.4
    • Maturity: Stable
  • Credit: National Science Foundation, Chan Zuckerberg Initiative DAF, an advised fund of Silicon Valley Community Foundation, NHGRI.
  • Contact: Michael Love michaelisaiahlove _at_ gmail.com
  • Collection: -

Publications

Zhu A, Srivastava A, Ibrahim JG, Patro R, Love MI "Nonparametric Expression Analysis Using Inferential Replicate Counts " Nucleic Acids Res. 2019 Oct 10;47(18):e105. https://doi.org/10.1093/nar/gkz622
PMID: 31372651
PMCID: PMC6765120


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