gdc-rnaseq-tool

gdc-rnaseq-tool for retrieving RNA-seq files from the GDC portal that are identified by TCGA barcodes.

Topic

RNA-seq

Operation: Data handling; Query and retrieval
Input: GDC Manifest File
Output: Merged_Counts.tsv, Merged_FPKM.tsv, Merged_FPKM-UQ.ts, Merged_miRNA_Counts.tsv, Merged_miRNA_rpmm.tsv
Software interface: Graphical user interface
Language: Python
Operating system: Linux
License: Not stated

Cost

Source: https://github.com/cpreid2/gdc-rnaseq-to
ol/releases/download/1.0/gdc-rnaseq-
tool.py
Documentation: https://github.com/cpreid2/gdc-rnaseq-to
ol/blob/master/README.md
Home page: https://github.com/cpreid2/gdc-rnaseq-to
ol
Data: https://portal.gdc.cancer.gov/
Links: https://wiki.nci.nih.gov/display/TCGA/TC
GA+barcode

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