For better experience, turn on JavaScript!


htseq-qa

htseq-qa

htseq-qa tool is for quality assessment of RNA-seq data. It creates plots of positional nucleotide compositions and quality values. It is a part of the HTSeq package (see links).

Topic

RNA-Seq; Sequence analysis

Details

  • Operation: Gene expression profiling
  • Input: FASTA, FASTQ, SAM, BAM
  • Output: GTF, GFF
  • Software interface: Library
  • Language: Python
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: GNU GPL v3
  • Cost: Free
  • Version name: 0.11.2
  • Credit: The European Union 6th and 7th Framework Programme network.
  • Contact: Simon Anders anders _at_ embl.de | Simon Anders sanders _at_ fs.tum.de
  • Collection: HTSeq

Publications

Anders S, Pyl PT, Huber W "HTSeq--a Python framework to work with high-throughput sequencing data." Bioinformatics. 2015 Jan 15;31(2):166-9. 2014 Sep 25. https://doi.org/10.1093/bioinformatics/btu638
PMID: 25260700
PMCID: PMC4287950


Download and documentation








If you find errors, please report here.