htseq-qa tool is for quality assessment of RNA-seq data. It creates plots of positional nucleotide compositions and quality values. It is a part of the HTSeq package (see links).
RNA-Seq; Sequence analysis
Anders S, Pyl PT, Huber W "HTSeq--a Python framework to work with high-throughput sequencing data." Bioinformatics. 2015 Jan 15;31(2):166-9. 2014 Sep 25. https://doi.org/10.1093/bioinformatics/btu638
PMID: 25260700
PMCID: PMC4287950
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