For better experience, turn on JavaScript!


net-SNE

net-SNE

net-SNE is a tool to visualize single-cell RNA-seq (scRNA-seq) data. The net-SNE algorithm uses neural networks to learn a mapping function from high-dimensional data.

Topic

RNA-Seq; Gene expression

Details

  • Operation: Dimensionality reduction
  • Software interface: Command-line user interface
  • Language: C++, MATLAB
  • Operating system: Linux
  • License: The MIT licence
  • Cost: Free
  • Version name: -
  • Credit: National Institutes of Health (NIH), the Kwanjeong Educational Foundation, the Sloan Research Fellowship, the US National Science Foundation.
  • Contact: Hoon Cho hhcho _at_ mit.edu
  • Collection: -

Publications

Cho H, Berger B, Peng J "Generalizable and Scalable Visualization of Single-Cell Data Using Neural Networks " Cell Syst. 2018 Aug 22;7(2):185-191.e4. https://doi.org/10.1016/j.cels.2018.05.017
PMID: 29936184
PMCID: PMC6469860


Download and documentation








If you find errors, please report here.