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ngShoRT

ngShoRT

ngShoRT is a pre-processing tool for trimming high-throughput sequencing data. The ngShoRT algorithm can process both single- and paired-end data and supports multi-threading.

Topic

Sequencing; Quality affairs; Sequence analysis

Details

  • Operation: Sequence trimming
  • Input: FASTQ, QSEQ
  • Output: -
  • Software interface: Command-line user interface
  • Language: Perl
  • Operating system: Microsoft Windows, Mac OS X, Linux
  • License: GNU General Public License v3
  • Cost: Free
  • Version name: 2.2
  • Maturity: Stable
  • Credit: National Institute of General Medical Sciences of the National Institutes of Health.
  • Contact: Chuming Chen chenc _at_ udel.edu | Sari S Khaleel Sari.S.Khaleel.DM _at_ Dartmouth.edu | Hongzhan Huang hhuang _at_ udel.edu | Cathy H Wu wuc _at_ udel.edu
  • Collection: -

Publications

Chen C, Khaleel SS, Huang H, Wu CH "Software for pre-processing Illumina next-generation sequencing short read sequences." Source Code Biol Med. 2014 May 3;9:8. 2014. https://doi.org/10.1186/1751-0473-9-8
PMID: 24955109
PMCID: PMC4064128


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