Integrated genome browser (IGB)

Integrated Genome Browser (IGB) is a desktop application for browsing genomes and large-scale related datasets. It displays annotations and position-specific graphs, among others. Affymetrix originally developed the IGB tool.

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Topic
Publications
Download and documentation

Integrated genome browser (IGB)

Topic

Genomics; Data visualisation

Details

Operation: Genome visualisation
Input: Affymetrix XML, BAM, SAM, BAR, BED, BEDGRAPH, BigBED, BigWIG, BGR, BNIB, Cytoband, DAS XML, Expression Graphs (.egr, .egr.txt, .sin), FASTA, GenBank, GFF, GR, PSL, Link.psl, PSLX, Scored Intervals (.sin, .egr, .egr.txt), Scored Map (.map), SGR, TALLY, USeq, VCF, Wiggle, 2Bit
Output: -
Software interface: Graphical user interface
Language: Java
Operating system: Microsoft Windows, Mac OS X, Linux
License: Common Public License Version 1.0

Cost

Version name: -

Maturity:

Credit: The National Institutes of Health (NIH)
Contact: Ann E. Loraine aloraine _at_ uncc.edu
Collection: -

Publications

Freese NH, Norris DC, Loraine AE "Integrated genome browser: visual analytics platform for genomics." Bioinformatics. 2016 Jul 15;32(14):2089-95. Epub 2016 Mar 16. https://doi.org/10.1093/bioinformatics/btw069
PMID: 27153568
PMCID: PMC4937187

Nicol JW, Helt GA, Blanchard SG Jr, Raja A, Loraine AE "The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets." Bioinformatics. 2009 Oct 15;25(20):2730-1. https://doi.org/10.1093/bioinformatics/btp472
PMID: 19654113
PMCID: PMC2759552

Download and documentation

Source: https://bitbucket.org/lorainelab/integra
ted-genome-browser/src/master/
Documentation: https://wiki.transvar.org/display/igbman
/Home
Home page: https://bitbucket.org/lorainelab/integra
ted-genome-browser/src/master/
Links: http://bioviz.org/igb

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Integrated genome browser (IGB)

Integrated genome browser (IGB)

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