ouijaflow

A tool for estimating pseudo-times in RNA-seq data. The Ouija algorithm uses an orthogonal Bayesian method to learn pseudo-times using marker genes.

Topic

RNA-seq; Transcriptomics

Operation: Pathway or network prediction; Differential gene expression analysis; Gene expression profiling
Software interface: Command-line user interface
Language: Python
Operating system: Microsoft Windows, Mac OS X, Linux
License: Not stated

Cost

Credit: UK Medical Research Council, the Canadian Statistical Sciences Institute.
Contact: Christopher Yau c.yau _at_ bham.ac.uk
Collection: -

Campbell KR, Yau C "A descriptive marker gene approach to single-cell pseudotime inference." Bioinformatics. 2019 Jan 1;35(1):28-35. https://doi.org/10.1093/bioinformatics/bty498
PMID: 29939207
PMCID: PMC6298060

Source: https://github.com/kieranrcampbell/ouija
flow
Documentation: https://github.com/kieranrcampbell/ouija
flow/blob/master/README.md
Home page: https://github.com/kieranrcampbell/ouija
flow

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