p-Creode is a tool for mapping multi-branched cellular differentiation pathways using single-cell RNA-seq data. The p-Creode algorithm uses an unsupervised method to create, compare multi-branching graphs, and infer developmental trajectories. Alternative name: Creode.
RNA-seq; Transcriptomics
Herring CA, Banerjee A, McKinley ET, Simmons AJ, Ping J, Roland JT, Franklin JL, Liu Q, Gerdes MJ, Coffey RJ, Lau KS "Unsupervised Trajectory Analysis of Single-Cell RNA-Seq and Imaging Data Reveals Alternative Tuft Cell Origins in the Gut." Cell Syst. 2018 Jan 24;6(1):37-51.e9. Nov 15. https://doi.org/10.1016/j.cels.2017.10.012
PMID: 29153838
PMCID: PMC5799016
If you find errors, please report here.
SECTIONS
TutorialsFind thousands of Bioinformatics and Life Science software tools and databases in the newly launched
Ads