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powsimR

powsimR

powsimR is a tool to simulate differential expression RNA-seq data. The powsimR package can simulate read counts, model the mean, dispersion, dropout distributions, and compute the power of sample sizes.

Topic

RNA-seq

Details

  • Operation: Modelling and simulation; RNA-Seq analysis
  • Software interface: Command-line user interface
  • Language: R
  • Operating system: Microsoft Windows, Mac OS X, Linux
  • License: GNU GPL v2
  • Cost: Free
  • Version name: 1.1.5
  • Maturity: Mature
  • Credit: Deutsche Forschungsgemeinschaft (DFG).
  • Contact: Beate Vieth vieth.beate _at_ gmail.com
  • Collection: -

Publications

Vieth B, Ziegenhain C, Parekh S, Enard W, Hellmann I "powsimR: power analysis for bulk and single cell RNA-seq experiments." Bioinformatics. 2017 Nov 1;33(21):3486-3488. https://doi.org/10.1093/bioinformatics/btx435
PMID: 29036287


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