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rCASC

rCASC

rCASC is a tool to classify single-cell RNA-seq (scRNA-seq) data. The rCASC had algorithms from count generation to cell sub-population identification.

Topic

RNA-Seq; Gene expression

Details

  • Operation: Dimensionality reduction; Standardisation and normalisation
  • Software interface: Command-line user interface
  • Language: R, Docker
  • Operating system: Linux
  • License: GNU General Public License v3
  • Cost: Free
  • Version name: 3.0.6
  • Credit: -
  • Contact: Raffaele Calogero raffaele.calogero _at_ unito.it | marco.beccuti _at_ unito.it
  • Collection: -

Publications

Alessandrì L, Cordero F, Beccuti M, Arigoni M, Olivero M, Romano G, Rabellino S, Licheri N, De Libero G, Pace L, Calogero RA "rCASC: reproducible classification analysis of single-cell sequencing data." Gigascience 8(9). https://doi.org/10.1093/gigascience/giz105
PMID: 31494672
PMCID: PMC6732171


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