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rMAPS
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rMAPS

rMAPS is a web-based tool for the analysis of RNA-binding proteins (RBPs) binding sites. rMAPS has two main modules: Motif Map for enrichment analysis of RNA-binding proteins and CLIP Map for computing of RNA-maps.



rMAPS

rMAPS is a web-based tool for the analysis of RNA-binding proteins (RBPs) binding sites. rMAPS has two main modules: Motif Map for enrichment analysis of RNA-binding proteins and CLIP Map for computing of RNA-maps.

Topic

Proteins; RNA; Gene transcripts; Nucleic acid structure analysis; Data visualisation

Details

  • Operation: Differential binding analysis; Sequence motif analysis
  • Software interface: Web user interface
  • Language: -
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
    • Cost: Free
  • Version name: 2.1.3
    • Maturity: Stable
  • Credit: National Institutes of Health (NIH). Alfred P. Sloan Foundation.
  • Contact: Juw Won Park juw.park _at_ louisville.edu
  • Collection: -

Publications

Park JW, Jung S, Rouchka EC, Tseng YT, Xing Y "rMAPS: RNA map analysis and plotting server for alternative exon regulation." Nucleic Acids Res. 2016 Jul 8;44(W1):W333-8. May 12. https://doi.org/10.1093/nar/gkw410
PMID: 27174931
PMCID: PMC4987942


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