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scVCMD

scVCMD

scVCMD is a method to cluster cells in single-cell RNA-seq (scRNA-seq) data. The scVCMD algorithm can cluster cells originating from multiple experiments and can distinguish sub-populations with shared markers.

Topic

Transcriptomics; RNA-seq

Details

  • Operation: Clustering
  • Software interface: Command-line user interface; Graphical user interface
  • Language: MATLAB
  • Operating system: Microsoft Windows, Mac OS X, Linux
  • License: Apache License 2.0
  • Cost: Free
  • Version name: -
  • Credit: National Science Foundation (NSF),CAPES Foundation, Ministry of Education of Brazil, National Institutes of Health (NIH).
  • Contact: Rui Kuang kuang _at_ cs.umn.edu | Jakub Tolar tolar003 _at_ umn.edu
  • Collection: -

Publications

Zhang H, Lee CAA, Li Z, Garbe JR, Eide CR, Petegrosso R, Kuang R, Tolar J "A multitask clustering approach for single-cell RNA-seq analysis in Recessive Dystrophic Epidermolysis Bullosa." PLoS Comput Biol. 2018 Apr 9;14(4):e1006053. eCollection 2018 Apr. https://doi.org/10.1371/journal.pcbi.1006053
PMID: 29630593
PMCID: PMC5908193


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