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scphaser

scphaser is a tool to phase haplotypes in single-cell RNA-seq (scRNA-seq) data. scphaser can phase de novo and rare variants.

Topic

RNA-seq

Details

Operation: RNA-Seq analysis
Software interface: Command-line user interface
Language: R
Operating system: Linux; Mac OS X; Microsoft Windows
License: GNU General Public License v3

Cost

Version name: 1.0.0

Credit: Swedish Foundation for Strategic Research, European Research Council, the Swedish Research Council.
Contact: Rickard Sandberg rickard.sandberg _at_ ki.se
Collection: -

Publications

Edsgärd D, Reinius B, Sandberg R "scphaser: haplotype inference using single-cell RNA-seq data." Bioinformatics. 2016 Oct 1;32(19):3038-40. https://doi.org/10.1093/bioinformatics/btw484
PMID: 27497440
PMCID: PMC5039928

Download and documentation

Source: https://github.com/edsgard/scphaser
Documentation: https://github.com/edsgard/scphaser/blob
/master/README.md
Home page: https://github.com/edsgard/scphaser

If you find errors, please report here.

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