trumpet

trumpet is a tool for the quality assessment of m(6)A-seq data. The trumpet algorithm combines the quality metrics of both ChIP-seq and RNA-seq.

Topic

Sequencing; RNA-seq; methyl-seq; Gene expression

Cost

Credit: 1Key Laboratory of Information Fusion Technology of Ministry of Education, School of Automation, Northwestern Polytechnical University, Xian, 710027 Shaanxi China
Contact: Teng Zhang tengzhagn156 _at_ 126.com
Collection: -

Zhang T, Zhang SW, Zhang L, Meng J "trumpet: transcriptome-guided quality assessment of m(6)A-seq data." BMC Bioinformatics. 2018 Jul 13;19(1):260. https://doi.org/10.1186/s12859-018-2266-3
PMID: 30001693
PMCID: PMC6044007

Source: https://github.com/skyhorsetomoon/Trumpe
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Documentation: https://github.com/skyhorsetomoon/Trumpe
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Home page: https://github.com/skyhorsetomoon/Trumpe
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