BioNanoAnalyst is a tool for evaluating potential mis-assemblies in reference genomes using optical maps. It is a cross-platform graphical user interface (GUI) program. It produces GFF3 output of potential mis-assembled regions and it also has a zoom in visualization of such genomic locations.
Sequence assembly
Yuan Y, Bayer PE, Scheben A, Chan CK, Edwards D "BioNanoAnalyst: a visualisation tool to assess genome assembly quality using BioNano data." BMC Bioinformatics. 2017 Jun 30;18(1):323. https://doi.org/10.1186/s12859-017-1735-4
PMID: 28666410
PMCID: PMC5493081
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