CUDA-EC is a tool to parallelize error correction of short reads by leveraging the power of GPU. The corrected short reads by this tool are ready for assembly. It implements a space-efficient Bloom filter data structure.
Error correction
Shi H, Schmidt B, Liu W, Muller-Wittig W "A parallel algorithm for error correction in high-throughput short-read data on CUDA-enabled graphics hardware." J Comput Biol. 2010 Apr;17(4):603-15. https://doi.org/10.1089/cmb.2009.0062
PMID: 20426693
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