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Edena is a tool for de novo genome assembly that is based on overlap layout assembly framework and it is applicable to very short reads from the Illumina platform (e.g. 35 bp). It implements additional features that include exact matching and spurious reads removal. The use of exact matching simplifies and speed up the overlap step.


Sequence assembly



Hernandez D, Francois P, Farinelli L, Osteras M, Schrenzel J "De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer." Genome Res. 2008 May;18(5):802-9.
PMID: 18332092
PMCID: PMC2336802

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