ELOPER is a tool to pre-process paired-end short reads for a better performance during assembly. It implements an algorithm that detects overlaps between both ends of the paired-end reads, which then merged those reads with significant overlaps. The performance is superior than assemblers that typically consider the two ends of each paired-end read separately for overlap detection. However, this tool does not perform the assembly step itself but rather it processed the paired-end reads for assembly.
Silver DH, Ben-Elazar S, Bogoslavsky A, Yanai I "ELOPER: elongation of paired-end reads as a pre-processing tool for improved de novo genome assembly." Bioinformatics. 2013 Jun 1;29(11):1455-7. Epub 2013 Apr 19. https://doi.org/10.1093/bioinformatics/btt169
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