HLAreporter is a tool for mapping reads to a known reference panel of HLA alleles and then use these reads for de novo assembly. Apparently, the tool has outperformed similar tools such as HLAminer and PHLAT.
Huang Y, Yang J, Ying D, Zhang Y, Shotelersuk V, Hirankarn N, Sham PC, Lau YL, Yang W "HLAreporter: a tool for HLA typing from next generation sequencing data." Genome Med. 2015 Mar 16;7(1):25. 2015. https://doi.org/10.1186/s13073-015-0145-3
If you find errors, please report here.
Find thousands of Bioinformatics and Life Science software tools and databases in the newly launched