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HapCol

HapCol

HapCol is a tool for assembling haplotypes from long reads. It exploits the random errors property of long read sequencing platforms and implemented an exact algorithm that scales well with increasing read coverage and minimizes the overall error corrections.

Topic

Sequence assembly

Details

Publications

Pirola Y, Zaccaria S, Dondi R, Klau GW, Pisanti N, Bonizzoni P "HapCol: accurate and memory-efficient haplotype assembly from long reads." Bioinformatics. 2016 Jun 1;32(11):1610-7. Epub 2015 Aug 26. https://doi.org/10.1093/bioinformatics/btv495
PMID: 26315913


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