Mix is a tool for finishing genome assemblies by mixing multiple draft genomes with the goal to improve sequence contiguity. This tool does not require the use of a reference genome. It implements an extension graph based on contig ends and alignments among them.
Sequence assembly
Soueidan H, Maurier F, Groppi A, Sirand-Pugnet P, Tardy F, Citti C, Dupuy V, Nikolski M "Finishing bacterial genome assemblies with Mix." BMC Bioinformatics. 2013;14 Suppl 15:S16. 2013 Oct 15. https://doi.org/10.1186/1471-2105-14-S15-S16
PMID: 24564706
PMCID: PMC3851838
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