SQUAT is a tool for both pre-assembly and post-assembly evalutation. The pre-assembly evaluation is based on read quality whereas the post-assembly steps takes into account how well reads are mapped onto a reference genome. The output is presented as a report in HTML format for visualization.
Sequence assembly
Yang LA, Chang YJ, Chen SH, Lin CY, Ho JM "SQUAT: a Sequencing Quality Assessment Tool for data quality assessments of genome assemblies." BMC Genomics. 2019 Apr 18;19(Suppl 9):238. https://doi.org/10.1186/s12864-019-5445-3
PMID: 30999844
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