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SR-ASM is a tool for assembling short reads from the 454 sequencing platform. The algorithm implemented is a heuristic method based on graph model and takes advantage of the way 454 sequence output is presented.


Sequence assembly



Blazewicz J, Bryja M, Figlerowicz M, Gawron P, Kasprzak M, Kirton E, Platt D, Przybytek J, Swiercz A, Szajkowski L "Whole genome assembly from 454 sequencing output via modified DNA graph concept." Comput Biol Chem. 2009 Jun;33(3):224-30. Epub 2009 May 3.
PMID: 19477687

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