misSEQuel is a tool for detecting and correcting errors in draft assemblies. It implements an algorithm that is able to incorporate both paired-end reads information and optical maps to correct mis-assemblies.
Muggli MD, Puglisi SJ, Ronen R, Boucher C "Misassembly detection using paired-end sequence reads and optical mapping data." Bioinformatics. 2015 Jun 15;31(12):i80-8. https://doi.org/10.1093/bioinformatics/btv262
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