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RUbioSeq
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RUbioSeq

RUbioSeq is an integrated software suite for primary and secondary analysis of single nucleotide (SNP), copy number variants (CNV), and bisulfite-seq analyses.



RUbioSeq

RUbioSeq is an integrated software suite for primary and secondary analysis of single nucleotide (SNP), copy number variants (CNV), and bisulfite-seq analyses.

Topic

Exome sequencing; Sequencing; Epigenetics

Details

  • Operation: Variant calling
  • Software interface: Work-flow; command-line user interface
  • Language: Perl
  • Operating system: Linux
  • License: CC BY-NC-ND 3.0
    • Cost: Free
  • Version name: 3.8.1
    • Maturity: Mature
  • Credit: M.R-C. is funded by BLUEPRINT Consortium (FP7/2007-2013;) under grant agreement number 282510. J.M.F is funded by the Spanish National Institute of Bioinformatics (INB) a project by the Spanish Ministry of Economy and Competitiveness (BIO2007-666855).
  • Contact: Miriam Rubio-Camarillo mrubioc _at_ cnio.es
  • Collection: -

Publications

Rubio-Camarillo M, Gómez-López G, Fernández JM, Valencia A, Pisano DG "RUbioSeq: a suite of parallelized pipelines to automate exome variation and bisulfite-seq analyses." Bioinformatics. 2013 Jul 1;29(13):1687-9. https://doi.org/10.1093/bioinformatics/btt203
PMID: 23630175
PMCID: PMC3694642


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