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FQC Dashboard

FQC Dashboard

FQC Dashboard is a quality control tool that integrates the results from the FastQC tool (see links) and displays them in an interactive HTML format.

Topic

Sequencing; Quality affairs; Sequence analysis

Details

  • Operation: Sequencing quality control
  • Software interface: Command-line user interface
  • Language: Javascript;Python
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: The MIT License
  • Cost: Free
  • Version name: -
  • Maturity: Stable
  • Credit: The Microbiomes in Transition Initiative LDRD Program at the Pacific Northwest National Laboratory, a multi-program national laboratory operated by Battelle for the DOE.
  • Contact: Joseph Brown joseph.brown _at_ pnnl.gov
  • Collection: -

Publications

Brown J, Pirrung M, McCue LA "FQC Dashboard: integrates FastQC results into a web-based, interactive, and extensible FASTQ quality control tool." Bioinformatics. 2017 Jun 9. pii: 3865781. https://doi.org/10.1093/bioinformatics/btx373
PMID: 28605449
PMCID: PMC5870778


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