FQC Dashboard

FQC Dashboard is a quality control tool that integrates the results from the FastQC tool (see links) and displays them in an interactive HTML format.

Topic

Sequencing; Quality affairs; Sequence analysis

Details

Operation: Sequencing quality control
Software interface: Command-line user interface
Language: Javascript;Python
Operating system: Linux; Mac OS X; Microsoft Windows
License: The MIT License

Cost

Version name: -

Maturity:

Credit: The Microbiomes in Transition Initiative LDRD Program at the Pacific Northwest National Laboratory, a multi-program national laboratory operated by Battelle for the DOE.
Contact: Joseph Brown joseph.brown _at_ pnnl.gov
Collection: -

Publications

Brown J, Pirrung M, McCue LA "FQC Dashboard: integrates FastQC results into a web-based, interactive, and extensible FASTQ quality control tool." Bioinformatics. 2017 Jun 9. pii: 3865781. https://doi.org/10.1093/bioinformatics/btx373
PMID: 28605449
PMCID: PMC5870778

Download and documentation

Source: https://github.com/pnnl/fqc
Documentation: https://pnnl-fqc.readthedocs.io/en/lates
t/
Home page: https://github.com/pnnl/fqc
Links: https://bioinformaticshome.com/tools/rna
-seq/descriptions/FastQC.html

If you find errors, please report here.

SECTIONS

Tutorials
In-house software
Blog
News
Find Jobs
History
Definition of Bioinformatics
ENCYCLOPEDIA
COVID-19
⚬ Timeline of outbreak
⚬ Blog
⚬ Scientific Facts
⚬ Daily statistics
⚬ News

TOOLS

Find thousands of Bioinformatics and Life Science software tools and databases in the newly launched

Database of Bioinformatics Software Tools and Resources.

Ads

FQC Dashboard

FQC Dashboard

Topic

Details

Publications

Download and documentation

TOOLS

1. SNP Tools

2. GWAS Tools

3. Genotype Imputation Tools

4. MSA tools

5. CNV tools

6. WGA tools

7. RNA-seq tools

8. Proteomics Tools

9. Nucleic Acid Structure Analysis Tools

10. Nucleic Acid Sequence Analysis Tools

11. Sequence Logo Tools

12. In-house Software Tools