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StemID

StemID

StemID is a tool for the identification of stem cells in single-cell RNA-seq (scRNA-seq) data based on RaceID results. See also StemID2 and RaceID3 (links).

Topic

RNA-seq; Cell biology; Genetics; Regenerative medicine

Details

  • Operation: Gene expression analysis; RNA-Seq analysis
  • Software interface: Command-line user interface
  • Language: R
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Credit: European Research Council, Nederlandse Organisatie voor Wetenschappelijk Onderzoek (NWO), DON Foundation, the Dutch Diabetes Research Foundation.
  • Contact: gruen _at_ ie-freibug.mpg.de | a.vanoudenaarden _at_ hubrecht.eu | gruen _at_ ie-freibug.mpg.de | a.vanoudenaarden _at_ hubrecht.eu
  • Collection: -

Publications

GrĂ¼n D, Muraro MJ, Boisset JC, Wiebrands K, Lyubimova A, Dharmadhikari G, van den Born M, van Es J, Jansen E, Clevers H, de Koning EJP, van Oudenaarden A "De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data." Cell Stem Cell. 2016 Aug 4;19(2):266-277. https://doi.org/10.1016/j.stem.2016.05.010
PMID: 27345837
PMCID: PMC4985539


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