SHARCGS is a tool for accurate and fast assembly of short reads (e.g. 25 to 40 nucleotides). This assembler is able to assemble millions of extremely short reads and handles sequencing errors. In comparison to SSAKE, the authors claimed this tool generates almost no mis-assemblies.
Sequence assembly
Dohm JC, Lottaz C, Borodina T, Himmelbauer H "SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing." Genome Res. 2007 Nov;17(11):1697-706. https://doi.org/10.1101/gr.6435207
PMID: 17908823
PMCID: PMC2045152
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