SSAKE is a tool for de novo assembly of massive amount of short reads. It implements a progressive search through a prefix tree for the longest overlap between all sequences in a pairwise manner. The output of the assembler is contigs.
Sequence assembly
Warren RL, Sutton GG, Jones SJ, Holt RA "Assembling millions of short DNA sequences using SSAKE." Bioinformatics. 2007 Feb 15;23(4):500-1. 2006 Dec 8. https://doi.org/10.1093/bioinformatics/btl629
PMID: 17158514
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