SSAKE is a tool for de novo assembly of massive amount of short reads. It implements a progressive search through a prefix tree for the longest overlap between all sequences in a pairwise manner. The output of the assembler is contigs.
Warren RL, Sutton GG, Jones SJ, Holt RA "Assembling millions of short DNA sequences using SSAKE." Bioinformatics. 2007 Feb 15;23(4):500-1. 2006 Dec 8. https://doi.org/10.1093/bioinformatics/btl629
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