BATS (Basic Analysis Toolkit for biological Sequences) is a software tool and library for the analysis of local sequence alignments by string matching, global sequence alignments by longest common subsequence (LCS) using affine or concave gap cost functions. BATS can also filter strings from sequences and compute the statistical significance as z-score and generate models.
Sequence analysis; Database management; DNA
Giancarlo R, Siragusa A, Siragusa E, Utro F "A basic analysis toolkit for biological sequences." Algorithms Mol Biol 2007 https://doi.org/10.1186/1748-7188-2-10
PMID: 17877802
PMCID: PMC2147010
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