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Bioinformatics Toolkit

Bioinformatics Toolkit

Bioinformatics Toolkit is a web-server consisting of a collection of sequence analysis tools.
Search tools: HHblits, HHpred, HMMER, PatternSearch, ProtBLAST, PSI-BLAST
Alignment: Alignmentviewer, Clustal Omega, Kalign, MAFFT, MSAProbs, MUSCLE, T-Coffee
Sequence Analysis: Aln2Plot, DeepCoil, DeepCoil2, HHrepID, MARCOIL, PCOILS, REPPER, TPRpred
Secondary Structure: Ali2D, HHomp, Quick2D
Tertiary Stucture: MODELLER, SamCC
Classification: ANESCON, CLANS, MMseqs2, PhyML
Utilities: 6FrameTranslation, BackTranslator, FormatSeq, HHfilter, RetrieveSeq, Seq2ID, Reformat


Bioinformatics; Proteins; Structure analysis; Structure prediction; Sequence sites, features and motifs


  • Operation: Protein structure analysis; Query and retrieval; Protein structure prediction
  • Software interface: Web user interface
  • Language: -
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Credit: Max Planck Society; German Federal Ministry of Education and Research (BMBF).
  • Contact: mpi-toolkit _at_
  • Collection: -


Alva V, Nam SZ, Söding J, Lupas AN "The MPI bioinformatics Toolkit as an integrative platform for advanced protein sequence and structure analysis." Nucleic Acids Res. 2016; 44(W1):W410-5
PMID: 27131380
PMCID: PMC4987908

Gabler Felix, Nam Seung-Zin, Till Sebastian, Mirdita Milot, Steinegger Martin, Söding Johannes, Lupas Andrei N, Alva Vikram "Protein Sequence Analysis Using the MPI Bioinformatics Toolkit" Current protocols in bioinformatics
PMID: 33315308

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