BuddySuite is a collection of four related tools:
1. SeqBuddy is a tool to handle FASTA, GenBank, and NEXUS sequence file formats. SeqBuddy includes functions to manipulate and analyze sequence data using 50+ separate tool modules.
2. AlignBuddy: 30 separate tool modules to read, write, analyze, and manipulate PHYLIP, Stockholm, and NEXUS sequence alignment files.
3. PhyloBuddy: Consists of 18 tool modules to manage and manipulate phylogenetic trees in NEXUS, Newick, and NeXML formats.
4. DatabaseBuddy: Contains function to search NCBI, UniProt, and Ensembl databases. The DatabaseBuddy algorithms can sort and filter the search results.
Sequencing; Sequence analysis; Phylogenetics; Nucleic acid structure analysis
Bond SR, Keat KE, Barreira SN, Baxevanis AD "BuddySuite: Command-Line Toolkits for Manipulating Sequences, Alignments, and Phylogenetic Trees." Mol. Biol. Evol. 2017; 34(6):1543-1546 https://doi.org/10.1093/molbev/msx089
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