CRISPRCasFinder is a tool to find CRISPR (clustered regularly interspaced short palindromic repeats) arrays and detect Cas proteins. The CRISPRCasFinder algorithm aids validation using a rating system, predicts the orientation of CRISPRs, and detects and types Cas protein based on the latest classification.
Model organisms; Transcription factors and regulatory sites; Sequence composition, complexity and repeats; DNA polymorphism; Gene expression
Couvin D, Bernheim A, Toffano-Nioche C, Touchon M, Michalik J, Néron B, Rocha EPC, Vergnaud G, Gautheret D, Pourcel C "CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins." Nucleic Acids Res. 2018; 46(W1):W246-W251 https://doi.org/10.1093/nar/gky425
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